PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_C0DB55E98.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 230aa    MW: 25721.3 Da    PI: 6.0361
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_C0DB55E98.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.1e-14125212387
                            EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            k+lt+sdv + gr+vlpkk ae+    + ++ ++ l++ d     +W++k++    ++ks++y+l   ++eFvk +gL++gD ++++ 
  Traes_7AL_C0DB55E98.2 125 KELTKSDVANVGRIVLPKKDAEASlpPLCERDPVILQMDDmVLPITWKFKYSRfwpNNKSRMYILD-STSEFVKTHGLQAGDALIIY- 210
                            899******************98888666666766777775555*******666788888778777.9****************998. PP

                            -SS CS
                     B3  85 dgr 87 
                             ++
  Traes_7AL_C0DB55E98.2 211 -KN 212
                            .44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.27E-19122221No hitNo description
SuperFamilySSF1019361.28E-14122211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-19122218IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-4123223IPR003340B3 DNA binding domain
PfamPF023621.8E-10125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLNKNAYSYY PAPNQEHTHP FSLDNNQAKD PGSIPSFGIE SFNTTSLAPN MSAHMPPMEG  60
PLPTKEPEAP EDMPARVATI KDEMDARNGV ELKCETVDAL PELKQGHESC ASKFNSGEYQ  120
VILRKELTKS DVANVGRIVL PKKDAEASLP PLCERDPVIL QMDDMVLPIT WKFKYSRFWP  180
NNKSRMYILD STSEFVKTHG LQAGDALIIY KNPVPGKYIV RGEKAIQQTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739020.0AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573243.11e-122PREDICTED: B3 domain-containing protein IDEF1-like
SwissprotQ6Z1Z31e-103IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLW5HAQ31e-173W5HAQ3_WHEAT; Uncharacterized protein
STRINGMLOC_37086.21e-165(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-34B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]